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  • Programs comparing gene sets

    Does anybody know of a program to compare different gene sets on the same loci?

    This is what I want to do: Our group is doing de-novo sequencing and assembly of a eukaryotic genome. I have run a lot of different gene finding programs on our sequence, and now I want to compare the gene models to a set of "correct" genes (that we have cloned and curated manually). I would like to end up with something similar to Table1 in this paper:



    Before I start writing my own code to do this, I thought I would check if anyboby here knows of any programs (since this is a quite common thing, found in all papers about gene prediction programs).

    thanks
    /Jakub

    Edit: Found this: http://www.biomedcentral.com/1471-2105/4/50
    Last edited by 454andSolid; 03-24-2010, 06:34 AM.

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