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Old 01-13-2011, 02:40 AM   #1
john6015
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Default genome annotation

hello,
i have microcoleus vaginatus assembled contigs, i would like to make gene annotation on the data i have, any suggestion about a method or software i can use?
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Old 01-13-2011, 03:53 AM   #2
maasha
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Try RAST

http://rast.nmpdr.org/


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Old 01-13-2011, 04:45 AM   #3
john6015
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thanks,
registered and waiting for confirmation.
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Old 01-13-2011, 11:10 PM   #4
flxlex
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"RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome." http://ratt.sourceforge.net/

"JCVI Annotation Service" http://www.jcvi.org/cms/research/pro...vice/overview/.

"IGS Annotation Engine" http://ae.igs.umaryland.edu/cgi/index.cgi

I have used none of these, just RAST...
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