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Old 01-26-2017, 11:54 AM   #1
Dani
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Location: Bay Area

Join Date: Dec 2016
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Default STAR - Analyzing RNAseq data from degraded RNA for both, mRNA and miRNAs

Hi,

I am using STAR to align my RNAseq reads and I realize that the parameters for looking for miRNAs (or other short RNAs) are very different than those for aligning mRNAs (especially splicing). Is there a way to accomplish both or should I analyze each file twice?

Thanks,

Danielle
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