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Old 01-26-2017, 12:54 PM   #1
Location: Bay Area

Join Date: Dec 2016
Posts: 14
Default STAR - Analyzing RNAseq data from degraded RNA for both, mRNA and miRNAs


I am using STAR to align my RNAseq reads and I realize that the parameters for looking for miRNAs (or other short RNAs) are very different than those for aligning mRNAs (especially splicing). Is there a way to accomplish both or should I analyze each file twice?


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degraded rna, rnaseq, star

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