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  • How many mutations in WTSS

    I'm a novel student bioinformatics and I am working on a transcriptome dataset of 4 cancer patients.

    I've read a lot of articles about RNA-Seq. But none of the articles explains how many mutations you typically find in Rna sequencing of humans.
    I have a list of 5.000 mutations that occur in all the 4 patients at same position. (and more that only occurs in 1 or 2 patients) they spand 2000 known genes.
    dataset is alreay filtered for know Snp's
    Isn't that too much?? How many would you typically find ? Globally ?
    can't see the wood for trees
    Last edited by Stephanbio; 12-20-2010, 05:17 AM.

  • #2
    That all depends on the pipeline you used. What is your protocol for generating this SNP list?

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