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Old 05-11-2009, 09:55 AM   #1
lgoff
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Location: Cambridge, MA

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Default Adapter trimming in MAQ for SOLiD

I know maq is capable of trimming 3' adapter sequences for solexa reads. I assume that the same applies to SOLiD? Do I need to provide the sequence in colorspace? or the 'maq-modified' colorspace? Anyone have experience with this? Thanks in advance.

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