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  • Samtools merge

    A quick question on Samtools merge:

    Will the output bam file from Samtools merge remain to be sorted by chromosome coordinate?

    Thanks!

  • #2
    Originally posted by wangzkai View Post
    A quick question on Samtools merge:

    Will the output bam file from Samtools merge remain to be sorted by chromosome coordinate?

    Thanks!
    This is a question that can be quickly answered just by testing a merge on a small dataset (even artificial).

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