Hi there,
has someone experience with the integrated genomic viewer (IGV) or other alignment viewers? I need to display reads that overlap a certain genomic position and filter the rest out. Furthermore i want to filter the reads by strandedness. I played a little with the IGV, but could not find such a functionality.
For now i will make the workaround of filtering the reads with bedtools and samtools, which however is a little tiring.
Thanks in advance.
Matthias
has someone experience with the integrated genomic viewer (IGV) or other alignment viewers? I need to display reads that overlap a certain genomic position and filter the rest out. Furthermore i want to filter the reads by strandedness. I played a little with the IGV, but could not find such a functionality.
For now i will make the workaround of filtering the reads with bedtools and samtools, which however is a little tiring.
Thanks in advance.
Matthias