Hi all!
I need some tools advice.
So; I have mapped reads in BAM format.
I have called SNPs using samtools/bcftools.
Are there any good tools for exporting consensus sequences from; say a vcf file; in; say fasta format; that maintain infos like coverage?
Hope I am making sense here. Feel free to point me to appropriate threads on seqanswers; my crappy searching has not turned up anything!
I need some tools advice.
So; I have mapped reads in BAM format.
I have called SNPs using samtools/bcftools.
Are there any good tools for exporting consensus sequences from; say a vcf file; in; say fasta format; that maintain infos like coverage?
Hope I am making sense here. Feel free to point me to appropriate threads on seqanswers; my crappy searching has not turned up anything!
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