Hi all,
I am trying to do a GO analysis for Arabidopsis RNA-seq data with Goseq. The software needs gene length information for all the genes but I cannot find it anywhere. I used the supportedGenomes() function but it gave an error message as following:
Error in getNodeSet(doc, "//table[@border='1']")[[1]] :
subscript out of bounds
and I cannot find at which database and gene ID code Arabidopsis is. I cannot find it with supportedGeneIDs() function also.
Anyone any idea?
Good luck with any problem that brings you here!
Melis
I am trying to do a GO analysis for Arabidopsis RNA-seq data with Goseq. The software needs gene length information for all the genes but I cannot find it anywhere. I used the supportedGenomes() function but it gave an error message as following:
Error in getNodeSet(doc, "//table[@border='1']")[[1]] :
subscript out of bounds
and I cannot find at which database and gene ID code Arabidopsis is. I cannot find it with supportedGeneIDs() function also.
Anyone any idea?
Good luck with any problem that brings you here!
Melis
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