Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
unmapped reads with ssaha2 sammy07 Bioinformatics 2 10-22-2012 02:23 AM
parameter set of bwa-samtools for snp calling heiya De novo discovery 10 04-25-2012 06:27 PM
questions on ssaha2 pengchy Bioinformatics 0 09-25-2011 12:42 AM
ssaha2 with 454 Junior jtrivino Bioinformatics 0 05-13-2011 08:22 AM
How can i set the "mismatch" parameter in bwa genelab Bioinformatics 14 01-12-2011 02:08 PM

Thread Tools
Old 03-12-2012, 09:02 PM   #1
Junior Member
Location: China

Join Date: Aug 2011
Posts: 1
Default Set ssaha2 parameter for mismatch

I want to align 454 reads against a transcriptome reference using sssaha2. Tolerance are set to five mismatchs for each alignment. Which parameter can realize this?
xpchen1011 is offline   Reply With Quote

mismatch, parameter, ssaha2

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 05:41 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO