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Old 01-21-2014, 09:30 AM   #1
NGS_New_User
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Default Site with raw reads of Drosophila Melanogaster

Hi Everyone,

I have assembled a draft genome de novo of a non model organism (insect). I would like to compare it with Drosophila melanogaster (similarities etc) My plan is to map the Drosophila reads onto it and see how much of it will map onto our draft genome. My question is, where can I find the raw reads of D.melanogaster? What site can one direct me to that I can access D.mel reads?

Thanks, and any info will be appreciated!!
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Old 01-21-2014, 10:03 AM   #2
GenoMax
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ENA: http://www.ebi.ac.uk/ena/data/search...aster%20genome

SRA: http://www.ncbi.nlm.nih.gov/Traces/s...e+genome&go=Go

First entry in ENA looks promising but keep in mind that raw reads that went into the genome build may not be easily accessible.
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Old 01-21-2014, 11:29 AM   #3
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Thank you so so much GenoMax, I really do appreciate it :-)
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de novo assembly, drosophila, genome, raw reads

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