Hi
I have my .bam files sorted and indexed for my samples. Later I used the samtools idxstats to obtain the number of mapped and unmapped reads.
Can I take the reference_name column and No.of mapped reads column from all tab delim text files generated from samtools idxstats for all samples and create a count file and use it for subsequent analysis?
or is there anyway to create count data file from samtools idxstatsa and use it in DESeq2?
I have my .bam files sorted and indexed for my samples. Later I used the samtools idxstats to obtain the number of mapped and unmapped reads.
Can I take the reference_name column and No.of mapped reads column from all tab delim text files generated from samtools idxstats for all samples and create a count file and use it for subsequent analysis?
or is there anyway to create count data file from samtools idxstatsa and use it in DESeq2?
Comment