I am trying to run gsnap with RNA seq data. It starts to look like it's working, but then it dies with this complaint:
IIT file splice_sites_102311_1.iit appears to have an offset that is too large (offset after sigmas 6929586440, filesize 5395915 ...
Does anyone know what I am doing wrong? The lines in my iit file look like this:
>FBgn0034742_CG4294 2R:18492684..18492683 acceptor
>FBgn0034742_CG4294 2R:18490231..18490230 donor
>FBgn0034742_CG4294 2R:18490174..18490173 acceptor
>FBgn0034742_CG4294 2R:18489794..18489793 donor
>FBgn0034742_CG4294 2R:18489732..18489731 acceptor
>FBgn0034742_CG4294 2R:18489453..18489452 donor
>FBgn0034742_CG4294 2R:18489321..18489320 acceptor
>FBgn0034742_CG4294 2R:18489035..18489034 donor
>FBgn0034742_CG4294 2R:18488876..18488875 acceptor
>FBgn0034742_CG4294 2R:18488718..18488717 donor
>FBgn0034742_CG4294 2R:18488653..18488652 acceptor
>FBgn0034742_CG4294 2R:18488870..18488869 acceptor
>FBgn0034742_CG4294 2R:18488718..18488717 donor
>FBgn0034742_CG4294 2R:18488653..18488652 acceptor
>FBgn0034742_CG4294 2R:18488301..18488300 donor
>FBgn0032640_Sgt 2L:17473468..17473469 acceptor
>FBgn0032640_Sgt 2L:17471852..17471853 donor
>FBgn0032640_Sgt 2L:17473560..17473561 acceptor
>FBgn0259204_CG42308 X:6905441..6905442 donor
>FBgn0259204_CG42308 X:6905526..6905527 acceptor
>FBgn0259204_CG42308 X:6905789..6905790 donor
>FBgn0259204_CG42308 X:6905850..6905851 acceptor
>FBgn0259204_CG42308 X:6905522..6905523 acceptor
>FBgn0259204_CG42308 X:6905789..6905790 donor
Thank you.
Eric
IIT file splice_sites_102311_1.iit appears to have an offset that is too large (offset after sigmas 6929586440, filesize 5395915 ...
Does anyone know what I am doing wrong? The lines in my iit file look like this:
>FBgn0034742_CG4294 2R:18492684..18492683 acceptor
>FBgn0034742_CG4294 2R:18490231..18490230 donor
>FBgn0034742_CG4294 2R:18490174..18490173 acceptor
>FBgn0034742_CG4294 2R:18489794..18489793 donor
>FBgn0034742_CG4294 2R:18489732..18489731 acceptor
>FBgn0034742_CG4294 2R:18489453..18489452 donor
>FBgn0034742_CG4294 2R:18489321..18489320 acceptor
>FBgn0034742_CG4294 2R:18489035..18489034 donor
>FBgn0034742_CG4294 2R:18488876..18488875 acceptor
>FBgn0034742_CG4294 2R:18488718..18488717 donor
>FBgn0034742_CG4294 2R:18488653..18488652 acceptor
>FBgn0034742_CG4294 2R:18488870..18488869 acceptor
>FBgn0034742_CG4294 2R:18488718..18488717 donor
>FBgn0034742_CG4294 2R:18488653..18488652 acceptor
>FBgn0034742_CG4294 2R:18488301..18488300 donor
>FBgn0032640_Sgt 2L:17473468..17473469 acceptor
>FBgn0032640_Sgt 2L:17471852..17471853 donor
>FBgn0032640_Sgt 2L:17473560..17473561 acceptor
>FBgn0259204_CG42308 X:6905441..6905442 donor
>FBgn0259204_CG42308 X:6905526..6905527 acceptor
>FBgn0259204_CG42308 X:6905789..6905790 donor
>FBgn0259204_CG42308 X:6905850..6905851 acceptor
>FBgn0259204_CG42308 X:6905522..6905523 acceptor
>FBgn0259204_CG42308 X:6905789..6905790 donor
Thank you.
Eric
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