Hi everyone,
I am using CLC bio to do the de novo assembly of bacterial genomes. I found that changing the setting of distance of paired reads during importing the raw data could significantly affect the quality of de novo assembly (i.e. the counts of contigs). But I have no idea how to optimize such setting, which is not explained in the user guide of CLC.
Is there anyone knows? Thank you very much!
-Victor
I am using CLC bio to do the de novo assembly of bacterial genomes. I found that changing the setting of distance of paired reads during importing the raw data could significantly affect the quality of de novo assembly (i.e. the counts of contigs). But I have no idea how to optimize such setting, which is not explained in the user guide of CLC.
Is there anyone knows? Thank you very much!
-Victor
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