Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • BWA aligner: no install instructions ?

    I have downloaded bwa and unpacked it via tar xfvj

    What do I have to do now?

    I see files named COPYING, README.md and NEWS. None of them contains install instructions. There must be instructions but I cannot seem to find them ?

  • #2
    use the "make" command

    Comment


    • #3
      What OS are you using?

      BWA is supplied as a "source only" program. You will need to compile the source code (which is where "make" comes into play) for your OS.

      Comment


      • #4
        Thank you adamdeluca!

        But seriously, where are the instructions ? How can you publish software without giving the slightest hint of how to install it.

        Might be obvious for non-newbie linux users but in my eyes that's kind of ignorant not even dropping 2 sentences of how to install :/

        I have already seen configure commands and others so I was afraid I would cause more problems than I already had if I was too hasty.

        Well thanks again for the help!

        Edit: I'm using ubuntu, the make command is what had to be done!

        Comment


        • #5
          It's the first few lines of the README.md file:

          Code:
          git clone https://github.com/lh3/bwa.git
          cd bwa; make
          Though, to be fair, those aren't exactly the best instructions I've ever read (especially since you can skip the git... portion)!

          Comment


          • #6
            Originally posted by Jonathan87 View Post
            Thank you adamdeluca!

            But seriously, where are the instructions ? How can you publish software without giving the slightest hint of how to install it.

            Might be obvious for non-newbie linux users but in my eyes that's kind of ignorant not even dropping 2 sentences of how to install :/

            I have already seen configure commands and others so I was afraid I would cause more problems than I already had if I was too hasty.

            Well thanks again for the help!

            Edit: I'm using ubuntu, the make command is what had to be done!
            Welcome to the world of OSS.

            Comment

            Latest Articles

            Collapse

            • seqadmin
              Essential Discoveries and Tools in Epitranscriptomics
              by seqadmin



              The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist on Modified...
              Yesterday, 07:01 AM
            • seqadmin
              Current Approaches to Protein Sequencing
              by seqadmin


              Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
              04-04-2024, 04:25 PM

            ad_right_rmr

            Collapse

            News

            Collapse

            Topics Statistics Last Post
            Started by seqadmin, 04-11-2024, 12:08 PM
            0 responses
            55 views
            0 likes
            Last Post seqadmin  
            Started by seqadmin, 04-10-2024, 10:19 PM
            0 responses
            52 views
            0 likes
            Last Post seqadmin  
            Started by seqadmin, 04-10-2024, 09:21 AM
            0 responses
            45 views
            0 likes
            Last Post seqadmin  
            Started by seqadmin, 04-04-2024, 09:00 AM
            0 responses
            55 views
            0 likes
            Last Post seqadmin  
            Working...
            X