Hello guys
I have a very basic question.
I got a sam file after mapping by BWA and I found lots of format like this:
ILLUMINA-XXXXXX:7:FC6XXXXXXXX:2:1:8471:2169 141 * 0 0 * * 0 0 TTTTTGTTCAAAAACACTCTGGAACTTAAAAGTAAAACTCTTCCACGTACATCTCTGGCTTATTGGTGTCTTTTTCTCTTTTTGAAGGCGTTTTGAAATGG IIIIIIIIIIIIIHIIIIIIIIIIIIIFIIIIIIIIIIHIGIIIGIIIIIIIDGIIIIIGIBHGIIEGFGGIIHIDDDIIIIHHB>HC<F?C>EECAFGGD
Others like this
ILLUMINA-XXXXXX:7:FCXXXXXXXX:2:1:13814:2169 163 chr24 42647385 60 101M = 42647444 160 AAACATTGTTTATCAACATTAGATGTAACATAAATCTCTAATGTACATACCTGATGGGAAAACAAGTAAAACAATTCATATTGATGTCAACCAAATGCATA GIDGGGECEGAAGGGG@GGGGGGGGDGBIIIIHDIIIHIHGGHIIEDHIIHIIIIHIIIIIIGHHIHIHHGHDIIGHHDHBEEDIIIG<D@DDDGGGGDDD XT:A:U NM:i:3 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:44G4A15C35 XA:Z:chr24,-42545737,101M,4;
Is previous one a unmapping reads?
Thanks a lot!
I have a very basic question.
I got a sam file after mapping by BWA and I found lots of format like this:
ILLUMINA-XXXXXX:7:FC6XXXXXXXX:2:1:8471:2169 141 * 0 0 * * 0 0 TTTTTGTTCAAAAACACTCTGGAACTTAAAAGTAAAACTCTTCCACGTACATCTCTGGCTTATTGGTGTCTTTTTCTCTTTTTGAAGGCGTTTTGAAATGG IIIIIIIIIIIIIHIIIIIIIIIIIIIFIIIIIIIIIIHIGIIIGIIIIIIIDGIIIIIGIBHGIIEGFGGIIHIDDDIIIIHHB>HC<F?C>EECAFGGD
Others like this
ILLUMINA-XXXXXX:7:FCXXXXXXXX:2:1:13814:2169 163 chr24 42647385 60 101M = 42647444 160 AAACATTGTTTATCAACATTAGATGTAACATAAATCTCTAATGTACATACCTGATGGGAAAACAAGTAAAACAATTCATATTGATGTCAACCAAATGCATA GIDGGGECEGAAGGGG@GGGGGGGGDGBIIIIHDIIIHIHGGHIIEDHIIHIIIIHIIIIIIGHHIHIHHGHDIIGHHDHBEEDIIIG<D@DDDGGGGDDD XT:A:U NM:i:3 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:44G4A15C35 XA:Z:chr24,-42545737,101M,4;
Is previous one a unmapping reads?
Thanks a lot!
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