Hi, guys, I was trying the "new" version of tophat and found that it has 3708 lines.
But in the old version, 1.0.13 it only has around 1600 lines. so I wonder WTH is going on? I open the tophat file and found that from 1857 to the end of file, basically it is the same as the first 1800 lines. they even do the "import" part twice. For example, the following lanes appeared one at line 2 and AGAIN at line 1872.
import sys
import getopt
import subprocess
import errno
import os
import tempfile
import warnings
import shutil
import copy
from datetime import datetime, date, time
Can the authors give us some explanations?
But in the old version, 1.0.13 it only has around 1600 lines. so I wonder WTH is going on? I open the tophat file and found that from 1857 to the end of file, basically it is the same as the first 1800 lines. they even do the "import" part twice. For example, the following lanes appeared one at line 2 and AGAIN at line 1872.
import sys
import getopt
import subprocess
import errno
import os
import tempfile
import warnings
import shutil
import copy
from datetime import datetime, date, time
Can the authors give us some explanations?
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