Dear Bowtie Users,
I noticed that in my mapping results some uniquely mapped sequences are reported to be mapped multiple times. How come?
I am mapping to miRbase data base. I prepared indexes twice as I did mapping. Each time the same result.
Ps. Mapping options:
sudo ./bowtie -p 1 -f -v 0 -l 15 -a indexes/miRbase samples/CPM15_SignReads.fa map_m_v0.map
Could you please help me and solve the mystery?
I noticed that in my mapping results some uniquely mapped sequences are reported to be mapped multiple times. How come?
I am mapping to miRbase data base. I prepared indexes twice as I did mapping. Each time the same result.
Ps. Mapping options:
sudo ./bowtie -p 1 -f -v 0 -l 15 -a indexes/miRbase samples/CPM15_SignReads.fa map_m_v0.map
Could you please help me and solve the mystery?
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