I've noticed that:
lrt <- glmLRT(fit, contrast=c(-1,1,0))
vs
lrt <- glmLRT(fit, contrast=c(1,-1,0))
gives you different set of genes. How do I decide about the order (1, -1 or -1, 1); I just want to extract the DEGs between 2 conditions.
Thanks a lot, Guy
lrt <- glmLRT(fit, contrast=c(-1,1,0))
vs
lrt <- glmLRT(fit, contrast=c(1,-1,0))
gives you different set of genes. How do I decide about the order (1, -1 or -1, 1); I just want to extract the DEGs between 2 conditions.
Thanks a lot, Guy
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