Does Mira create scaffolds during paired-end read sequence assemblies? gsAssembler does, so I just assumed Mira would. But maybe I need to run downstream software (Bambus?) to extract this information?
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Phillip
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Phillip
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library all 1000 6000 (.......).* pair (.*)_left (.*)_right
perl -i -pe 's/ */\t/g' 454Contigs.mates
# Priorities priority ALL 1 # Redundancies redundancy 2 # min group size mingroupsize 0
goBambus -c 454Contigs.contig -m 454Contigs.mates -o 454Contigs_bambus -C 454Contigs_bambus.conf
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