Is there a script that can get the exon # of each probe in a file.
For example, in the attached file the probe id, location, and gene name are all listed. What I would like to do is for each put an exon # or intron beside it.
So,
Probe ID Chromosome Location Gene Score
A_16_P00686497 chr3:38531418-38531462 ACVR2B 0.4704 Exon xx
A_16_P00885156 chr3:183092118-183092174 MCF2L2 0.8601 Exon xx
A_16_P18683539 chr9:90184449-90184508 DAPK1 0.9573 Intron
A_16_P17108812 chr5:45264657-45264716 HCN1 0.9168 Intron
Thanks .
For example, in the attached file the probe id, location, and gene name are all listed. What I would like to do is for each put an exon # or intron beside it.
So,
Probe ID Chromosome Location Gene Score
A_16_P00686497 chr3:38531418-38531462 ACVR2B 0.4704 Exon xx
A_16_P00885156 chr3:183092118-183092174 MCF2L2 0.8601 Exon xx
A_16_P18683539 chr9:90184449-90184508 DAPK1 0.9573 Intron
A_16_P17108812 chr5:45264657-45264716 HCN1 0.9168 Intron
Thanks .