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Old 08-04-2011, 04:55 AM   #1
abakelaar
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Location: den haag

Join Date: Jul 2011
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Default mapping with gmap

Hi there

I'm trying to map data with gmap. It runs, but it takes hours.
he prints a message: no paths found for .... is this good or bad???
I've got paired-end files with each 6 gb
How much data gives gmap?? it's now 25gb.

greetings
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Old 11-03-2011, 05:38 AM   #2
brdido
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Location: Sao Paulo, Brazil

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That message is normal but it means that gmap could not find any alignment for that read. Path may refer to the algorithm used in gmap...
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