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Old 10-20-2016, 06:38 AM   #1
aabi
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Location: Washington, DC

Join Date: May 2016
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Default Training in Molecular Modeling and Molecular Dynamics @ NIH, USA, Nov 29-Dec 2, 2016



Training in Molecular Modeling and Molecular Dynamics
Nov 29-Dec 2, 2016

Where?
National Institutes of Health
9000 Rockville Pike
Building 60, Room 162
Bethesda, MD 20892, USA

Background:
Predicting the effect of a mutation on the structure and function of a protein is not just for researchers with super-computer facilities. Thanks to public cloud computing options, anyone with basic molecular biology background can setup and run compute intensive computational modeling and dynamics experiments.

Objectives:
Participants will use popular open source tools and techniques necessary for conducting successful molecular modeling and dynamics experiments... in the cloud.

Hands-on Skills/Tools Taught
  • Ab initio protein structure modeling: QUARK / Rosetta
  • Remote homology detection: HHpred
  • Fragment-based protein structure modeling: Phyre2
  • Homology-based protein structure modeling: I-TASSER, MODELLER
  • Protein structure quality analysis: PROCHECK, WHAT_IF, Verify3D, PDB-REDO
  • Protein structure refinement: ModRefiner, ModLoop, Ramachandran plot
  • Macromolecular visualization: VMD, USCF Chimera
  • Molecular dynamics: NAMD
Highlights
  • Cloud-based, high performance computing platform
  • Cloud image freely provided to participants
  • Training provided by active NIH researchers
  • Cookbook style bound manual for all exercises
  • Direct, after training support through exclusive forum membership
  • Continuing Educational Credits
For more information and registration, please visit the following page;
Information and Registration
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