Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
3'UTR- Length tr7 Bioinformatics 2 07-17-2014 03:01 AM
5'UTR and 3'UTR gene_x Bioinformatics 5 03-03-2013 12:32 AM
3'utr NicoBxl Bioinformatics 6 05-31-2012 12:25 AM
gene and isoform expression level estimation with Cufflinks Jane M RNA Sequencing 1 09-01-2011 12:47 AM
Isoform tracking in Cufflinks ega2d Bioinformatics 0 04-10-2011 03:59 PM

Thread Tools
Old 11-11-2013, 02:07 AM   #1
Location: norway

Join Date: Aug 2011
Posts: 73
Default 3'UTR Isoform from Cufflinks

Hi everyone,

I ran cuffdiff on treated/control samples to look for mRNA isoforms. I am especially interested in isoforms that affect 3'UTR lengths. Does anyone know how to pick out those isoforms that affect 3'UTR length?

Could I just do an intersect with the known 3'UTR coordinates?
Palgrave is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 12:58 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO