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Old 11-11-2013, 02:07 AM   #1
Palgrave
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Location: norway

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Default 3'UTR Isoform from Cufflinks

Hi everyone,

I ran cuffdiff on treated/control samples to look for mRNA isoforms. I am especially interested in isoforms that affect 3'UTR lengths. Does anyone know how to pick out those isoforms that affect 3'UTR length?

Could I just do an intersect with the known 3'UTR coordinates?
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