|
|
|
|
|||||||
Similar Threads
|
||||
| Thread | Thread Starter | Forum | Replies | Last Post |
| exome copy number and LOH | rcorbett | Bioinformatics | 20 | 11-26-2013 01:22 AM |
| Copy number normalization in capture experiments? | anjulka | General | 2 | 01-23-2012 01:07 PM |
| tools to detect copy number variants | nans_bn | Bioinformatics | 2 | 01-12-2012 05:25 AM |
| Copy number analysis using 454 data | ps376 | Bioinformatics | 3 | 10-08-2011 05:56 AM |
| way to normalize copy number data for small RNAs/miRNAs? | vebaev | Bioinformatics | 2 | 03-28-2011 03:18 AM |
 |
|
|
Thread Tools |
05-17-2010, 08:34 AM
|
#1 |
|
Member
Location: USA Join Date: Oct 2009
Posts: 41
|
how to check copy number from certain gene
Hi, All
I have a cell mix sample: 30 cells A + 80 cells B. I used Illuima GA to sequence this sample, and then used BWA to do mapping and SAMtools to call SNPs. Now, I want to find how many copies a certain gene has in these two cell lines (i.e., A and B). Anyone knows a good way to find out the copy number? I'll appreciate all your help. -Cliff |
|
|
|
07-14-2014, 02:43 PM
|
#2 |
|
Senior Member
Location: Los Angeles Join Date: Nov 2013
Posts: 142
|
I am working on this same issue, did you have any progress here?
|
|
|
|
|
07-14-2014, 03:52 PM
|
#3 |
|
Senior Member
Location: East Coast USA Join Date: Feb 2008
Posts: 6,992
|
This tool was just presented at ISMB. http://www.ncbi.nlm.nih.gov/pubmed/25016581 Software is available at: https://oncocnv.curie.fr/
|
|
|
|
|
| Thread Tools | |
|
|
