Hello,
I am using SeqMonk to view reads mapped to a genome. I would like to import an extra annotation set (CpG Islands) to use in my analysis as is described in the SeqMonk help file under the heading "Importing Extra Annotation".
I would like to use the CpG Island annotation set that is displayed in the Ensembl Genome Browser, but I can't figure out how to download just the CpG Island data track as a GFF file from Ensembl.
Can anyone tell me how to download just the CpG Island data from the Ensembl Genome Browser (or Ensembl FTP) in GFF format so that I can use it in SeqMonk?
Thanks in advance,
jjw
I am using SeqMonk to view reads mapped to a genome. I would like to import an extra annotation set (CpG Islands) to use in my analysis as is described in the SeqMonk help file under the heading "Importing Extra Annotation".
I would like to use the CpG Island annotation set that is displayed in the Ensembl Genome Browser, but I can't figure out how to download just the CpG Island data track as a GFF file from Ensembl.
Can anyone tell me how to download just the CpG Island data from the Ensembl Genome Browser (or Ensembl FTP) in GFF format so that I can use it in SeqMonk?
Thanks in advance,
jjw
Comment