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Old 10-08-2010, 10:32 AM   #1
yuanzhi
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Default Any way to check if a SNP is present in 1000 genomes

I went to the browser of 1000 genomes at http://browser.1000genomes.org/index.html. It seems like I can only type in a gene name. Is there any interface in 1000 genomes where I can type in a SNP position, e.g., chrN:123456, to check if it is in 1000 genomes?

Thanks!
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Old 10-08-2010, 11:30 PM   #2
Gustavo
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Try http://db.systemsbiology.net/gestalt/cgi-pub/Kaviar - hope that helps.
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Old 10-09-2010, 02:28 AM   #3
Simon Anders
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This was already discussed, in this thread:
http://seqanswers.com/forums/showthread.php?t=5443

Note especially post #3.
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Old 10-09-2010, 09:23 AM   #4
laura
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You could also use an ensembl url like

http://browser.1000genomes.org/Homo_...7695-133161157
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