Hi All
Hi I have got my raw data from biologist who running sequencing on Proton. I need to get the .fastq reads for downstreaming analysis (e.g. QC control, Alignment , DE analysis...) on Torrent Server by command line. I don't know that if Proton could output .fastq directly.
I found that on Torrent Browser there is a panel called 'select a plugin to run'
if I click 'FileExporter' ,there are 4 options
Create SFF?
Create FASTQ?
Include Variant Caller Files (if available)?
Zip results?
If I select 2 and 4 and submit, there is not any response
Btw, if I don't use Browser and use Torrent Server to run command line, how could I do it. I mean I don't know how to run FileExporter in Command line ,what is input and output?
Thank you!
Sorry this has been sorted cos is my plugin version's problem.
Hi I have got my raw data from biologist who running sequencing on Proton. I need to get the .fastq reads for downstreaming analysis (e.g. QC control, Alignment , DE analysis...) on Torrent Server by command line. I don't know that if Proton could output .fastq directly.
I found that on Torrent Browser there is a panel called 'select a plugin to run'
if I click 'FileExporter' ,there are 4 options
Create SFF?
Create FASTQ?
Include Variant Caller Files (if available)?
Zip results?
If I select 2 and 4 and submit, there is not any response
Btw, if I don't use Browser and use Torrent Server to run command line, how could I do it. I mean I don't know how to run FileExporter in Command line ,what is input and output?
Thank you!
Sorry this has been sorted cos is my plugin version's problem.
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