I just installed pindel version 0.2.5a4. I'm new to the software. I followed the instruction on http://gmt.genome.wustl.edu/pindel/0.2.4/install.html
When I run the demo run code, the output basically executed until it reached the part where it said on the terminal:
Insertionsize in config: 250
And then nothing else seems to be happening. I can't tell if the software is running or if it's stuck. No new lines were being written to the output. I waited for 15 minutes but nothing else was happening so I terminated the job.
Is this normal? The demo is only a couple of Mbs, so I don't see why it should take so long.
When I run the demo run code, the output basically executed until it reached the part where it said on the terminal:
Insertionsize in config: 250
And then nothing else seems to be happening. I can't tell if the software is running or if it's stuck. No new lines were being written to the output. I waited for 15 minutes but nothing else was happening so I terminated the job.
Is this normal? The demo is only a couple of Mbs, so I don't see why it should take so long.
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