not able to load a bed file into UCSC genome browser

ataaillah · 01-18-2012, 08:46 AM

hello every body,
thank you very match for reading this question and I hope you can help me...
my problem is :
while trying to load a bed file I get the following error:
Error File 'class_I_sorted.txt' - Error line 2443 of custom track: chromEnd larger than chrom chr19 size (59206856 > 59128983)

I used the correct genome and it's last version. the data comes from a recent article correspond to ChIPseq experiments and the reads were mapped to the human genome using ELAND. I don't know if the latter uses a more recent version of human genome so that coordinates are shifted
could any one help ?
thank you in advance
Ataaillah

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01-18-2012, 08:46 AM	#1
ataaillah Junior Member Location: France Join Date: Jan 2012 Posts: 1	not able to load a bed file into UCSC genome browser hello every body, thank you very match for reading this question and I hope you can help me... my problem is : while trying to load a bed file I get the following error: Error File 'class_I_sorted.txt' - Error line 2443 of custom track: chromEnd larger than chrom chr19 size (59206856 > 59128983) I used the correct genome and it's last version. the data comes from a recent article correspond to ChIPseq experiments and the reads were mapped to the human genome using ELAND. I don't know if the latter uses a more recent version of human genome so that coordinates are shifted could any one help ? thank you in advance Ataaillah