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Old 06-26-2013, 03:11 PM   #1
JPreston
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Location: Eugene, OR

Join Date: Jun 2013
Posts: 17
Question Driver mutations from mouse tumor WGS data?

Hello!

I am trying to identify driver mutations from mouse tumor WGS data. I have a list of 1200 SNPs and small indels from an alignment to the mouse mm10 genome and I want to know the names of the genes to see if any SNPs are in known cancer genes. For human data I use mutationassesor.org, but I don't know of a similar tool for mouse data.
Any suggestions would be greatly appreciated!!
Thanks!
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Old 06-26-2013, 03:25 PM   #2
dpryan
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Have you tried SnpEff?
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Old 06-26-2013, 03:42 PM   #3
JPreston
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That looks great, Thanks!!!
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cancer genome, gene finding, mouse, snps

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