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03-14-2016, 06:48 AM
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#1 |
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Junior Member
Location: Sweden Join Date: Feb 2016
Posts: 5
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Cluster complete plasmid sequences
Hey all,
I have complete nucleotide sequences for 119 plasmids, with sizes ranging from 500 to 170000 base pairs. Is there a way to cluster those sequences such that I can sort out sequence redundancy? (for example, if a small sequence is covered to 100% in one of the bigger sequences, I want to recognize that in the cluster) I have tried doing it in uclust, but I think it cannot manage the length of the sequences. Can anyone recommend a good tool to do this? Thank you! |
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03-14-2016, 06:59 AM
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#2 |
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Senior Member
Location: East Coast USA Join Date: Feb 2008
Posts: 7,087
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For reference cross-posted: https://www.biostars.org/p/181585
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| Tags |
| alignment, clustering, plasmid |
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