Hi I am a rookie bioinformatics who will process the rna-seq from Ion-proton(Single-ended).
The pipeline for processing which I know until now is
Bowtie, Tophat, Cufflinks, and cummeRbund for RNA-seq alignment, assembly, DE analysis, and .visualization.
Any other options?
Or What is this advantage or disadvantage of this pipeline?
Thank you!
The pipeline for processing which I know until now is
Bowtie, Tophat, Cufflinks, and cummeRbund for RNA-seq alignment, assembly, DE analysis, and .visualization.
Any other options?
Or What is this advantage or disadvantage of this pipeline?
Thank you!