Hi,
Did anyone try the script " bed_to_juncs" supplied by tophat to convert junctions.bed to .juncs file ?
I have run: bed_to_juncs junctions.bed new_list.juncs,
but it's still running after two days!!! There is no error coming out.
After I forced it to stop by typing ^C, the following message came out:
^CTraceback (most recent call last):
File "/tophat-1.3.3/src/bed_to_juncs", line 68, in <module>
sys.exit(main())
File "/tophat-1.3.3/src/bed_to_juncs", line 43, in main
for line in sys.stdin.readlines():
KeyboardInterrupt
My junctions.bed has 26630 lines. Is it normal to take such a long time? What's the problem?
Many thanks for the help!
Did anyone try the script " bed_to_juncs" supplied by tophat to convert junctions.bed to .juncs file ?
I have run: bed_to_juncs junctions.bed new_list.juncs,
but it's still running after two days!!! There is no error coming out.
After I forced it to stop by typing ^C, the following message came out:
^CTraceback (most recent call last):
File "/tophat-1.3.3/src/bed_to_juncs", line 68, in <module>
sys.exit(main())
File "/tophat-1.3.3/src/bed_to_juncs", line 43, in main
for line in sys.stdin.readlines():
KeyboardInterrupt
My junctions.bed has 26630 lines. Is it normal to take such a long time? What's the problem?
Many thanks for the help!
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