Hi,
I'm working on de novo assembly of a complex genome. I've been using velvet to generate the assembly of paired reads from SOLiD and now I need some software to generate the scaffolds.
I know Bambus, but it seems that I should parse the output from velvet to generate an input. I don't know how to do it, and maybe you know of some other software to achieve the scaffolding.
Regards,
Xavier.
I'm working on de novo assembly of a complex genome. I've been using velvet to generate the assembly of paired reads from SOLiD and now I need some software to generate the scaffolds.
I know Bambus, but it seems that I should parse the output from velvet to generate an input. I don't know how to do it, and maybe you know of some other software to achieve the scaffolding.
Regards,
Xavier.
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