Hi,
As I am new in this field. I am trying to get the best score with larger start length from below file. Here, the file header is like Chromosome location, score, and start length. I want top start length w.r.t its score and other details.
chr9:136028339-136029648-|NM_021996|GBGT1 5.629998 1303 TGCTCAAGTACACTCATTTCA
chr9:136028339-136029648-|NM_021996|GBGT1 5.629998 1304 GCTCAAGTACACTCATTTCAT
chr9:136028339-136029648-|NM_021996|GBGT1 13.2 1301 TGTGCTCAAGTACACTCATTT
chr9:136028339-136029648-|NM_021996|GBGT1 10.8 1302 GTGCTCAAGTACACTCATTTC
chr12:54735989-54739299+|NM_016057|COPZ1 5.629998 216 GAGCCAGATGCTGAGTACTAT
chr12:54735989-54739299+|NM_016057|COPZ1 10.8 217 AGCCAGATGCTGAGTACTATG
chr16:21868579-21893272-|None|None 6.0 473 TTTAATGAGTATTCTGGATTG
chr16:21868579-21893272-|None|None 6.0 5880 TTGATCCTCCCTTAACCTATC
chr16:21868579-21893272-|None|None 6.0 5923 CTTCCTATTCCTCCAGCATAC
chr16:21868579-21893272-|None|None 6.0 6463 TGAAGTCATCTATCTGGTTTG
I want the output like this
chr9:136028339-136029648-|NM_021996|GBGT1 13.2 1301 TGTGCTCAAGTACACTCATTT
chr9:136028339-136029648-|NM_021996|GBGT1 10.8 1302 GTGCTCAAGTACACTCATTTC
chr12:54735989-54739299+|NM_016057|COPZ1 5.629998 216 GAGCCAGATGCTGAGTACTAT
chr12:54735989-54739299+|NM_016057|COPZ1 10.8 217
chr16:21868579-21893272-|None|None 6.0 5923 CTTCCTATTCCTCCAGCATAC
chr16:21868579-21893272-|None|None 6.0 6463 TGAAGTCATCTATCTGGTTTG
Any help is much appreciated.
Thanks
As I am new in this field. I am trying to get the best score with larger start length from below file. Here, the file header is like Chromosome location, score, and start length. I want top start length w.r.t its score and other details.
chr9:136028339-136029648-|NM_021996|GBGT1 5.629998 1303 TGCTCAAGTACACTCATTTCA
chr9:136028339-136029648-|NM_021996|GBGT1 5.629998 1304 GCTCAAGTACACTCATTTCAT
chr9:136028339-136029648-|NM_021996|GBGT1 13.2 1301 TGTGCTCAAGTACACTCATTT
chr9:136028339-136029648-|NM_021996|GBGT1 10.8 1302 GTGCTCAAGTACACTCATTTC
chr12:54735989-54739299+|NM_016057|COPZ1 5.629998 216 GAGCCAGATGCTGAGTACTAT
chr12:54735989-54739299+|NM_016057|COPZ1 10.8 217 AGCCAGATGCTGAGTACTATG
chr16:21868579-21893272-|None|None 6.0 473 TTTAATGAGTATTCTGGATTG
chr16:21868579-21893272-|None|None 6.0 5880 TTGATCCTCCCTTAACCTATC
chr16:21868579-21893272-|None|None 6.0 5923 CTTCCTATTCCTCCAGCATAC
chr16:21868579-21893272-|None|None 6.0 6463 TGAAGTCATCTATCTGGTTTG
I want the output like this
chr9:136028339-136029648-|NM_021996|GBGT1 13.2 1301 TGTGCTCAAGTACACTCATTT
chr9:136028339-136029648-|NM_021996|GBGT1 10.8 1302 GTGCTCAAGTACACTCATTTC
chr12:54735989-54739299+|NM_016057|COPZ1 5.629998 216 GAGCCAGATGCTGAGTACTAT
chr12:54735989-54739299+|NM_016057|COPZ1 10.8 217
chr16:21868579-21893272-|None|None 6.0 5923 CTTCCTATTCCTCCAGCATAC
chr16:21868579-21893272-|None|None 6.0 6463 TGAAGTCATCTATCTGGTTTG
Any help is much appreciated.
Thanks
Comment