Hi,
We are using IMAGE to fill in gaps of our genome assembly but are not sure how to generate the required input files:
contigs.fa.original and
read.placed.original
(http://sourceforge.net/apps/mediawik...w_to_run_IMAGE)
Our initial assembly is done with BWA. Does anyone have a script that can use a BAM file (the BWA output) to generate contigs.fa.original and read.placed.original?
Thanks!
Sarah Kingan
We are using IMAGE to fill in gaps of our genome assembly but are not sure how to generate the required input files:
contigs.fa.original and
read.placed.original
(http://sourceforge.net/apps/mediawik...w_to_run_IMAGE)
Our initial assembly is done with BWA. Does anyone have a script that can use a BAM file (the BWA output) to generate contigs.fa.original and read.placed.original?
Thanks!
Sarah Kingan