Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Typical costs for RNA-Seq analysis

    This is kind of the wrong place to post this question given that we are all analysts who do the work (mostly at universities) rather than sending it out. But I would like to know what companies that do analysis that is out-sourced generally charge. Consider an experiment such as this--three biological replicates, each with three samples:

    Code:
    | sample | treatment | replicate |
    |--------|-----------|-----------|
    | t1_A   | Tx1       | A         |
    | t2_A   | Tx2       | A         |
    | c_A    | control   | A         |
    | t1_B   | Tx1       | B         |
    | t2_B   | Tx2       | B         |
    | c_B    | control   | B         |
    | t1_C   | Tx1       | C         |
    | t2_C   | Tx2       | C         |
    | c_C    | control   | C         |
    What do you think an investigator would need to pay to outsource standard analysis:

    1. Sample quality
    1. Gene expression per sample
    1. Cross-sample FDR within replicate
    1. Cross-replicate FDR
    1. Pathway analysis
    1. Standard visualizations (MDS, PCA, MA, heatmap, venn)
    Last edited by [email protected]; 05-04-2017, 09:14 AM.

  • #2
    Here is one option.

    If you are at an academic institution it is very hard to do apple to apple comparisons since most institutions subsidize/discount services/compute time in creative ways so you will not know for sure. But then you are likely looking for a ballpark estimate anyway.

    Comment


    • #3
      HA! @GenoMax--that was my post that I made just now and they closed it :-/

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Strategies for Sequencing Challenging Samples
        by seqadmin


        Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
        03-22-2024, 06:39 AM
      • seqadmin
        Techniques and Challenges in Conservation Genomics
        by seqadmin



        The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

        Avian Conservation
        Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
        03-08-2024, 10:41 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, Yesterday, 06:37 PM
      0 responses
      8 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, Yesterday, 06:07 PM
      0 responses
      8 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 03-22-2024, 10:03 AM
      0 responses
      49 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 03-21-2024, 07:32 AM
      0 responses
      66 views
      0 likes
      Last Post seqadmin  
      Working...
      X