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Old 05-16-2011, 08:47 PM   #1
Junior Member
Location: Australia

Join Date: Apr 2010
Posts: 6
Default Looking process to convert gff3 format into ace format or sam format

Is there any application can convert gff3 file and related fasta files into ace file or sam file? I dont want to reinvent the wheel.
andylai is offline   Reply With Quote
Old 05-17-2011, 03:09 AM   #2
Peter (Biopython etc)
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,543

I don't understand what you want to do - going from GFF3 to ACE or SAM makes no sense.

You store annotation in GFF3 files (e.g. there is a gene at this location), but neither ACE nor SAM hold that kind of annotation (they are assembly/mapping files, e.g. this read mapped to this contig at this location).
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