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Old 03-05-2013, 02:17 PM   #1
Junior Member
Location: Newcastle Upon Tyne

Join Date: Mar 2013
Posts: 1
Exclamation Web Services Blastn Problems

Hi, I've just started trying out the WSDL web services and I'm trying to implement a workflow for the NCBI Blastn web service.

I know the contigs that I want to blast are available and on the nt database however, I keep getting incorrect database errors when trying to run.

The only documentation I can find on the database abbreviations of NCBI have been less than useful, but I thought nt would be pretty straight forward.

Following this large problem, I set up an alternative by downloading the whole nt database from NCBI and ran a blastall on an AWS instance, which took over an hour and a half for a single contig.

So I'm struggling to be honest and would appreciate anyone's insight or suggestions.

thanks for reading!
Andrew73 is offline   Reply With Quote

aws, blastn, ion torrent, web services, wsdl

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