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Thread | Thread Starter | Forum | Replies | Last Post |
FPKM/RPKM without GFF/GFT file | jgibbons1 | Bioinformatics | 2 | 02-22-2013 09:45 AM |
GFT file for rat | biofreak | General | 5 | 10-22-2012 07:17 AM |
cufflinks output against annotation file | masylichu | Bioinformatics | 1 | 09-19-2012 03:43 AM |
Zero FPKM at some Cufflinks output file | fuad193 | Bioinformatics | 1 | 06-07-2012 12:16 AM |
Cufflinks sample file(test_data.sam) output | snp_analyser | Bioinformatics | 0 | 06-07-2010 07:38 AM |
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#1 |
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Location: Raleigh NC Join Date: Sep 2013
Posts: 49
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I've aligned my RNAseq data to the mouse genome using bowtie2, but I guess that output doesn't account for abundance, correct? So then you need to use cufflinks to quantify? Do I have this correct?
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