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Old 10-18-2013, 04:28 PM   #1
Location: Raleigh NC

Join Date: Sep 2013
Posts: 49
Default What is the actually output of a Cufflinks GFT file?

I've aligned my RNAseq data to the mouse genome using bowtie2, but I guess that output doesn't account for abundance, correct? So then you need to use cufflinks to quantify? Do I have this correct?
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