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02-14-2014, 01:22 PM
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#1 |
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Junior Member
Location: Texas Join Date: Oct 2012
Posts: 3
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QC for replicates in ChIP-seq
Hi, I have some ChIP-seq data to QC.
I was browsing for a pipeline where you can compare between biological replicates for their similarities, but haven't had any luck. Is there a standard algorithm people use for this besides viewing the mapped tracks? Thanks! |
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07-18-2014, 05:18 AM
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#2 |
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Member
Location: Cambridge, UK Join Date: Aug 2008
Posts: 28
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The ChIPQC package in Bioconductor will show how all your ChIPs compare. It was designed specifically for dealing with replicates.
-Rory |
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