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05-28-2014, 01:39 PM
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#1 |
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Junior Member
Location: Philadelphia, PA Join Date: May 2014
Posts: 2
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Celera Assembler Installation Failure
Hello,
I'm just trying to test runCA, but it appears that the program can't find gatekeeper in its bin (though I've checked and it's there). Has anyone run into this problem before/have ideas what might be going on? I'm just an undergraduate/I don't have much experience with genome assembly so any advice/insight would be much appreciated! Error message is below. Thanks in advance. runCA failed. ---------------------------------------- Stack trace: at /usr/bin/runCA line 1501 main::caFailure('can\'t find \'gatekeeper\' program in /Linux-amd64/bin. Poss...', undef) called at /usr/bin/runCA line 1049 main::setParameters() called at /usr/bin/runCA line 6282 ---------------------------------------- Failure message: can't find 'gatekeeper' program in /Linux-amd64/bin. Possibly incomplete installation |
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05-28-2014, 02:36 PM
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#2 |
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Member
Location: Urbana IL Join Date: Mar 2013
Posts: 14
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You may want to change into the bin directory, or try adding the directory to your path
export PATH=/home/yourdirectory/wgs-8.1/Linux-amd64/bin:$PATH You can also add this to your .bashrc file |
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05-29-2014, 09:35 AM
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#3 |
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Junior Member
Location: Philadelphia, PA Join Date: May 2014
Posts: 2
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Thank you, that worked!
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