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Old 05-28-2014, 01:39 PM   #1
aleanza1
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Location: Philadelphia, PA

Join Date: May 2014
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Default Celera Assembler Installation Failure

Hello,
I'm just trying to test runCA, but it appears that the program can't find gatekeeper in its bin (though I've checked and it's there). Has anyone run into this problem before/have ideas what might be going on? I'm just an undergraduate/I don't have much experience with genome assembly so any advice/insight would be much appreciated! Error message is below. Thanks in advance.


runCA failed.

----------------------------------------
Stack trace:

at /usr/bin/runCA line 1501
main::caFailure('can\'t find \'gatekeeper\' program in /Linux-amd64/bin. Poss...', undef) called at /usr/bin/runCA line 1049
main::setParameters() called at /usr/bin/runCA line 6282

----------------------------------------
Failure message:

can't find 'gatekeeper' program in /Linux-amd64/bin. Possibly incomplete installation
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Old 05-28-2014, 02:36 PM   #2
bio_boris
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Default

You may want to change into the bin directory, or try adding the directory to your path

export PATH=/home/yourdirectory/wgs-8.1/Linux-amd64/bin:$PATH

You can also add this to your .bashrc file
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Old 05-29-2014, 09:35 AM   #3
aleanza1
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Thank you, that worked!
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