When I run the following command in linux
2bwt-builder ref.fasta
soap -a reads.fastq -D ref.fasta.index -o reads.soap
msort -k n9 reads.soap > sort.reads.soap
soapsnp -i sort.reads.soap -d ref.fasta -o reads.soapsnp
soap and msort (or use linux sort command) works well. But when I run soapsnp to call SNPs, I found
'segmentation fault'.
No idea about this.
2bwt-builder ref.fasta
soap -a reads.fastq -D ref.fasta.index -o reads.soap
msort -k n9 reads.soap > sort.reads.soap
soapsnp -i sort.reads.soap -d ref.fasta -o reads.soapsnp
soap and msort (or use linux sort command) works well. But when I run soapsnp to call SNPs, I found
'segmentation fault'.
No idea about this.
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