Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
MACS version 1.3.0 versus MACS version 1.4.0 neetu Bioinformatics 1 11-24-2011 04:13 AM
Comparing input peaks to IP peaks biznatch Epigenetics 2 09-24-2011 12:38 PM
ChIP-Seq: Using MACS to Identify Peaks from ChIP-Seq Data. Newsbot! Literature Watch 0 06-03-2011 03:00 AM
MAQ .map files to .bed/.sam for MACS calexand Bioinformatics 1 01-20-2011 09:14 AM
MACS peaks VeenaV Bioinformatics 2 11-10-2010 09:46 AM

Thread Tools
Old 01-10-2011, 06:13 AM   #1
Location: Oslo

Join Date: Dec 2010
Posts: 15
Question MACS peaks.bed

I wounder how MACS score the peaks. When you run MACS you get a output peaks.bed, this file include chromosome, start, stop, peaknumber and a score. How does MACS create this score? Does the length of the peak affect the score value?
khb is offline   Reply With Quote
Old 03-25-2012, 05:03 AM   #2
Location: LA

Join Date: May 2008
Posts: 78

is it really the score in the last column of the "NAME_peaks.bed" file?
rebrendi is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 03:15 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO