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  • How to deal with the document of SAM

    I am a beginner for NGS. When I made reads mapping, I found a document named SAM. How can I use this document?
    And how could I know where one read mapped? Thank you!

  • #2
    I believe you are asking about SAM file format description. If that is so then you will find the necessary information here: http://samtools.sourceforge.net/SAM1.pdf

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    • #3
      Originally posted by GenoMax View Post
      I believe you are asking about SAM file format description. If that is so then you will find the necessary information here: http://samtools.sourceforge.net/SAM1.pdf
      Thank you very much. I also want to know when i do reads mapping how can i know where a read mapped? could you give me some helps? Thak you!

      Comment


      • #4


        This provides a good explanation of SAM alignments.

        Originally posted by luckylove View Post
        Thank you very much. I also want to know when i do reads mapping how can i know where a read mapped? could you give me some helps? Thak you!

        Comment


        • #5
          Originally posted by GenoMax View Post
          http://genome.sph.umich.edu/wiki/SAM

          This provides a good explanation of SAM alignments.
          ok, thank you very much!

          Comment

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