Hello,
Anyone here tackled with the problem of calculating Fst measures for different populations while having the variants of every single population in a VCF file?
That's sorta the stage I am at. I have a reference genome, I mapped reads from different populations to it, called variants with Freebayes, and now not sure how to construct a phylogeny or calculate Fst.
Anyone?
Thank you.
Anyone here tackled with the problem of calculating Fst measures for different populations while having the variants of every single population in a VCF file?
That's sorta the stage I am at. I have a reference genome, I mapped reads from different populations to it, called variants with Freebayes, and now not sure how to construct a phylogeny or calculate Fst.
Anyone?
Thank you.
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