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Old 10-22-2014, 10:47 AM   #1
MariaGeorge61
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Location: Puebla Mexico

Join Date: Apr 2014
Posts: 5
Question Change of extension .results

Hello everybody:

Have a nice day! I should be very grateful if you would help me to know requirements to change file format .results to .sam (for exemple), and how to do it.
Thanks in advance and best regards,

MariaGeorge
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Old 10-22-2014, 02:41 PM   #2
GenoMax
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I assume you are asking about re-formatting the contents.

Can you tell us what kind of data this file is from and what program/instrument produced it? Do you know what it contains? Can you post a small example of the data from the beginning of the file?
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Old 10-23-2014, 11:01 AM   #3
MariaGeorge61
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Location: Puebla Mexico

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Dear GenoMax

Thank you for your kindness. The file contains data of transcriptome analysis (We have invoices), but the analyzer finds new and better job and sent us archives with file extension .results.
It could be useful to have in other format i.e, excel or any other resource let us to organize the results.

gene_id transcript_id(s) length effective_length expected_count TPM FPKM
um00001 um00001 1029.00 1019.71 301.11 113.80 88.30
um00002 um00002 1653.00 1643.71 86.16 19.73 15.31
um00003 um00003 1956.00 1946.71 142.15 27.33 21.21
um00005 um00005 1708.00 1698.71 603.29 133.55 103.62
um00006 um00006 2310.00 2300.71 1009.72 163.48 126.84
um00007 um00007 855.00 845.71 400.69 184.96 143.51
um00008 um00008 1167.00 1157.71 40.38 13.34 10.35
um00009 um00009 706.00 696.71 248.40 141.49 109.78
um00011 um00011 1686.00 1676.71 287.06 64.41 49.98
um00012 um00012 630.00 620.71 936.06 605.41 469.75
um00013 um00013 885.00 875.71 19.00 8.45 6.55
um00017 um00017 891.00 881.71 169.17 74.67 57.94
um00020 um00020 843.00 833.71 3712.43 1740.25 1350.29
um00025 um00025 1410.00 1400.71 3.00 0.81 0.63
um00026 um00026 1128.00 1118.71 227.12 77.81 60.38
um00027 um00027 840.00 830.71 454.32 213.80 165.89
um00028 um00028 851.00 841.71 152.43 70.72 54.87
um00029 um00029 999.00 989.71 122.53 47.80 37.09
um00030 um00030 2019.00 2009.71 75.86 14.11 10.95
um00031 um00031 1542.00 1532.71 175.69 43.28 33.58
um00032 um00032 665.00 655.71 3.04 1.85 1.44
um00034 um00034 1836.00 1826.71 13.00 2.67 2.07
um00036 um00036 672.00 662.71 182.83 110.01 85.36
um00037 um00037 1665.00 1655.71 573.17 130.30 101.10
um00038 um00038 1362.00 1352.71 90.91 25.51 19.79
um00039 um00039 951.00 941.71 111.62 45.92 35.63
um00040 um00040 921.00 911.71 18.27 7.78 6.04
um00041 um00041 1926.00 1916.71 110.53 21.60 16.76

We have some software programs to try the analysis, but we need to exit of .results
Thanks in advance and best regards.

MariaGeorge
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Old 10-23-2014, 02:31 PM   #4
GenoMax
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Maria: That looks like a tab (or space) separated text file. You should be able to open that directly in excel (choose "show all files" in file open dialog). Gene ID's appear to be from Ustilago. You only have FPKM values (is this from cufflinks analysis?)

At this point you can save the file in any other text format (csv, tab) and choose a file name you want.
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