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Old 04-24-2019, 10:19 PM   #1
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Location: New Jersey

Join Date: Apr 2019
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Default can I transform .tmap to .gtf/.gff?

Hello everyone,

Currently I am trying to identify novel lncRNAs. I just used cuffCompare and generate several files including .tmap file. After I used several thresholds to filter .tmap file I got a new .tmap file. The next step I wanna do is to extract CDS from reference fasta file according to the filtered gtf file. Is there some way that I can transform the .tmap file I filtered to gtf file?
sLee1024 is offline   Reply With Quote

cuffcompare, gffread, rna-seq analysis

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