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Old 03-03-2020, 11:33 AM   #1
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Location: Netherlands

Join Date: Mar 2020
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Question ARG detection ONT data


I am fairly new to bioinformatics, and I am currently working on a school project in which we want to detect antibiotic resistant genes in ONT data. We would like to use a tool to allign the ONT data to a database (probably CARD). Does anyone happen to know bioinformatics tools that are capable of doing this? We found tools like Ariba but such tools seem to work using illumina data only, so we cannot use it..

Thank you in advance.
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